UOLO - automatic object detection and segmentation in biomedical images

We propose UOLO, a novel framework for the simultaneous detection and segmentation of structures of interest in medical images. UOLO consists of an object segmentation module which intermediate abstract representations are processed and used as input for object detection. The resulting system is optimized simultaneously for detecting a class of objects and segmenting an optionally different class of structures. UOLO is trained on a set of bounding boxes enclosing the objects to detect, as well as pixel-wise segmentation information, when available. A new loss function is devised, taking into account whether a reference segmentation is accessible for each training image, in order to suitably backpropagate the error. We validate UOLO on the task of simultaneous optic disc (OD) detection, fovea detection, and OD segmentation from retinal images, achieving state-of-the-art performance on public datasets.Comment: Publised on DLMIA 2018. Licensed under the Creative Commons CC-BY-NC-ND 4.0 license: http://creativecommons.org/licenses/by-nc-nd/4.0

Brain-inspired robust delineation operator

In this paper we present a novel filter, based on the existing COSFIRE filter, for the delineation of patterns of interest. It includes a mechanism of push-pull inhibition that improves robustness to noise in terms of spurious texture. Push-pull inhibition is a phenomenon that is observed in neurons in area V1 of the visual cortex, which suppresses the response of certain simple cells for stimuli of preferred orientation but of non-preferred contrast. This type of inhibition allows for sharper detection of the patterns of interest and improves the quality of delineation especially in images with spurious texture. We performed experiments on images from different applications, namely the detection of rose stems for automatic gardening, the delineation of cracks in pavements and road surfaces, and the segmentation of blood vessels in retinal images. Push-pull inhibition helped to improve results considerably in all applications.Comment: Accepted at Brain-driven Computer Vision workshop at ECCV 201